Soeren Abel, PhD

RESTAMP – Rate estimates by sequence-tag analysis of microbial populations
Computational and Structural Biotechnology Journal, Mahmutovic, Anel, Gillman, Aaron Nicholas, Lauksund, Silje, Robson Moe, Natasha Anne, Manzi, Aime, Storflor, Merete, Abel zur Wiesch, Pia, Abel, Sören, 2021

Drug-target binding quantitatively predicts optimal antibiotic dose levels in quinolones
PLoS Computational Biology, Clarelli, Fabrizio, Palmer, Adam, Singh, Bhupender, Storflor, Merete, Lauksund, Silje, Cohen, Ted, Abel, Sören, Wiesch, Pia Abel zur, 2020

Selection or drift: The population biology underlying transposon insertion sequencing experiments
Computational and Structural Biotechnology Journal, Mahmutovic, Anel, Abel zur Wiesch, Pia, Abel, Sören, 2020

Reaction kinetic models of antibiotic heteroresistance
International Journal of Molecular Sciences, Martinecz, Antal, Clarelli, Fabrizio, Abel, Sören, Wiesch, Pia Abel Zur, 2019

Transposon-insertion sequencing screens unveil requirements for EHEC growth and intestinal colonization
PLoS Pathogens, Warr, Alyson R., Hubbard, Troy P., Munera, Diana, Blondel, Carlos J., Zur Wiesch, Pia Abel, Abel, Sören, Wang, Xiaoxue, Davis, Brigid M., Waldor, Matthew K., 2019

Deciphering the landscape of host barriers to Listeria monocytogenes infection
Proceedings of the National Academy of Sciences of the United States of America, Zhang, Ting, Abel, Sören, Wiesch, Pia Abelzur, Sasabe, Jumpei, Davis, Brigid M., Higgins, Darren E., Waldor, Matthew K., 2017

Genetic analysis of vibrio parahaemolyticus intestinal colonization
Proceedings of the National Academy of Sciences of the United States of America, Hubbard, Troy P., Chao, Michael C., Abel, Sören, Blondel, Carlos J., Wiesch, Pia Abel Zur, Zhou, Xiaohui, Davis, Brigid M., Waldor, Matthew K., 2016

Erratum
Nature Chemical Biology, Hatzios, Stavroula K., Abel, Sören, Martell, Julianne, Hubbard, Troy, Sasabe, Jumpei, Munera, Diana, Clark, Lars, Bachovchin, Daniel A., Qadri, Firdausi, Ryan, Edward T., Davis, Brigid M., Weerapana, Eranthie, Waldor, Matthew K., 2016

Chemoproteomic profiling of host and pathogen enzymes active in cholera
Nature Chemical Biology, Hatzios, Stavroula K., Abel, Sören, Martell, Julianne, Hubbard, Troy, Sasabe, Jumpei, Munera, Diana, Clark, Lars, Bachovchin, Daniel A., Qadri, Firdausi, Ryan, Edward T., Davis, Brigid M., Weerapana, Eranthie, Waldor, Matthew K., 2016

The design and analysis of transposon insertion sequencing experiments
Nature Reviews Microbiology, Chao, Michael C., Abel, Sören, Davis, Brigid M., Waldor, Matthew K., 2016

Cyclic di-GMP acts as a cell cycle oscillator to drive chromosome replication
Nature, Lori, C., Ozaki, S., Steiner, S., Böhm, R., Abel, S., Dubey, B. N., Schirmer, T., Hiller, S., Jenal, U., 2015

Analysis of Bottlenecks in Experimental Models of Infection
PLoS Pathogens, Abel, Sören, Abel zur Wiesch, Pia, Davis, Brigid M., Waldor, Matthew K., 2015

Classic reaction kinetics can explain complex patterns of antibiotic action
Science Translational Medicine, Abel Zur Wiesch, Pia, Abel, Sören, Gkotzis, Spyridon, Ocampo, Paolo, Engelstädter, Jan, Hinkley, Trevor, Magnus, Carsten, Waldor, Matthew K., Udekwu, Klas, Cohen, Ted, 2015

Sequence tag-based analysis of microbial population dynamics
Nature Methods, Abel, Sören, Abel Zur Wiesch, Pia, Chang, Hsiao Han, Davis, Brigid M., Lipsitch, Marc, Waldor, Matthew K., 2015

Infant rabbit model for diarrheal diseases
Current Protocols in Microbiology, Abel, Sören, Waldor, Matthew K., 2015

ARTIST
PLoS Genetics, Pritchard, Justin R., Chao, Michael C., Abel, Sören, Davis, Brigid M., Baranowski, Catherine, Zhang, Yanjia J., Rubin, Eric J., Waldor, Matthew K., 2014

Cell cycle transition from S-phase to G1 in Caulobacter is mediated by ancestral virulence regulators
Nature Communications, Fumeaux, Coralie, Radhakrishnan, Sunish Kumar, Ardissone, Silvia, Théraulaz, Laurence, Frandi, Antonio, Martins, Daniel, Nesper, Jutta, Abel, Sören, Jenal, Urs, Viollier, Patrick H., 2014

Cycling Empirical Antibiotic Therapy in Hospitals
PLoS Pathogens, Abel zur Wiesch, Pia, Kouyos, Roger, Abel, Sören, Viechtbauer, Wolfgang, Bonhoeffer, Sebastian, 2014

Bi-modal Distribution of the Second Messenger c-di-GMP Controls Cell Fate and Asymmetry during the Caulobacter Cell Cycle
PLoS Genetics, Abel, Sören, Bucher, Tabitha, Nicollier, Micaël, Hug, Isabelle, Kaever, Volkhard, Abel zur Wiesch, Pia, Jenal, Urs, 2013

Regulatory Cohesion of Cell Cycle and Cell Differentiation through Interlinked Phosphorylation and Second Messenger Networks
Molecular Cell, Abel, Sören, Chien, Peter, Wassmann, Paul, Schirmer, Tilman, Kaever, Volkhard, Laub, Michael T., Baker, Tania A., Jenal, Urs, 2011